Index

A | B | C | D | E | G | I | L | O | P | R | S

A

add_historical_event() (in module stk.supertree_toolkit)
all_sourcenames() (in module stk.supertree_toolkit)
amalgamate_trees() (in module stk.supertree_toolkit)

B

bibtex

C

check_subs() (in module stk.supertree_toolkit)
clean_data
clean_data() (in module stk.supertree_toolkit)
CLI
convert_files
copy
create_matrix
create_matrix() (in module stk.supertree_toolkit)
create_matrix_from_trees() (in module stk.supertree_toolkit)
create_name() (in module stk.supertree_toolkit)
create_subset
create_subset() (in module stk.supertree_toolkit)
create_tree_name() (in module stk.supertree_toolkit)

D

data summary
data_ind
data_independence() (in module stk.supertree_toolkit)
data_overlap
data_overlap() (in module stk.supertree_toolkit)
data_summary
data_summary() (in module stk.supertree_toolkit)

E

export_bib
export_bibliography() (in module stk.supertree_toolkit)
export_data
export_trees

G

get_all_characters() (in module stk.supertree_toolkit)
get_all_source_names() (in module stk.supertree_toolkit)
get_all_taxa() (in module stk.supertree_toolkit)
get_analyses_used() (in module stk.supertree_toolkit)
get_character_numbers() (in module stk.supertree_toolkit)
get_character_types_from_tree() (in module stk.supertree_toolkit)
get_characters_from_tree() (in module stk.supertree_toolkit)
get_characters_used() (in module stk.supertree_toolkit)
get_fossil_taxa() (in module stk.supertree_toolkit)
get_outgroup() (in module stk.supertree_toolkit)
get_publication_year_tree() (in module stk.supertree_toolkit)
get_publication_years() (in module stk.supertree_toolkit)
get_taxa_from_tree() (in module stk.supertree_toolkit)
get_weights() (in module stk.supertree_toolkit)
grouping

I

import_bibliography() (in module stk.supertree_toolkit)
import_data
import_tree() (in module stk.supertree_toolkit)
import_trees() (in module stk.supertree_toolkit)

L

load_phyml() (in module stk.supertree_toolkit)

O

obtain_trees() (in module stk.supertree_toolkit)

P

parse_subs_file() (in module stk.supertree_toolkit)
paste
permute_tree() (in module stk.supertree_toolkit)
permute_trees

R

read_matrix() (in module stk.supertree_toolkit)
replace_genera
replace_genera() (in module stk.supertree_toolkit)

S

safe_taxonomic_reduction
safe_taxonomic_reduction() (in module stk.supertree_toolkit)
set_all_tree_names() (in module stk.supertree_toolkit)
set_unique_names() (in module stk.supertree_toolkit)
single_sourcename() (in module stk.supertree_toolkit)
slicing
stk.supertree_toolkit (module)
sub_taxa
subs_file_from_str() (in module stk.supertree_toolkit)
subs_from_csv() (in module stk.supertree_toolkit)
substitute_taxa() (in module stk.supertree_toolkit)
substitute_taxa_in_trees() (in module stk.supertree_toolkit)